Journal: The Journal of biological chemistry
Article Title: Dysregulation of the progranulin-driven autophagy-lysosomal pathway mediates secretion of the nuclear protein TDP-43.
doi: 10.1016/j.jbc.2023.105272
Figure Lengend Snippet: Figure 3. Proteomic analyses suggest different intracellular origins of EV in the P1 and P2 fractions derived from HeLa cells exposed to bafilo- mycin A1 (Baf). HeLa cells were exposed to vehicle (DMSO) or 100 nM Baf for 24 h. Cell, P1, and P2 fractions in each treatment were prepared. A, immuno- EM images of vesicles in the P1 and P2 fractions derived from cells exposed to 100 nM Baf using the rabbit anti-C-terminal TDP-43 antibody. The image surrounded by a red brown square was magnified to compare vesicles between the P1 and P2 fractions. Scale bar represents 500 nm. B, a Venn diagram showing the distribution of proteins in the P1 and P2 fractions identified by LC–MS/MS analyses. C, representative immunoblots (ACTN4, ADAM10, p62, and α-tubulin) of the cell, P1, and P2 fractions are shown. D–F, densitometric data on (D) ACTN4, (E) ADAM10, and (F) p62 in the P1 and P2 fractions were calculated from immunoblotting results. In bar graphs, data are presented as means ± SD (N = 3) normalized against the P1 or P2 fraction derived from cells exposed to Baf. * indicates p < 0.05 by the two-tailed unpaired t test. DMSO, dimethyl sulfoxide; EV, extracellular vesicle; TDP-43, TAR DNA-binding protein 43 kDa.
Article Snippet: A monoclonal mouse anti-TDP-43 antibody (catalog no.: 60019-2-AP, Research Resource Identifier [RRID]: AB_2200520), polyclonal rabbit anti-C-terminal TDP-43 antibody (catalog no.: 12892-1-AP, RRID: AB_2200505), polyclonal rabbit anti-N-terminal TDP-43 antibody (catalog no.: 10782-2- AP, RRID: AB_615042), polyclonal rabbit anti-PGRN antibody (catalog no.: 18410-1-AP, RRID: AB_10598161), polyclonal rabbit anti-TSG101 antibody (catalog no.: 28283-1-AP, RRID: AB_2881104; catalog no.: 14497-1-AP, RRID: AB_2208090), polyclonal rabbit anti-ACTN4 antibody (catalog no.: 19096-1- AP, RRID: AB_10642150), polyclonal rabbit anti-ADAM10 antibody (catalog no.: 25900-1-AP, RRID: AB_2880291), and polyclonal rabbit anti-TFEB antibody (catalog no.: 13372-1-AP, RRID: AB_2919794) were purchased from ProteinTech; a monoclonal mouse anti-α-tubulin antibody (catalog no.: 70- 102) and polyclonal rabbit anti-GFP antibody (catalog no.: 60-011) from BioAcademia; a monoclonal mouse anti-LC3 antibody (catalog no.: M186-3), normal rabbit immunoglobulin G (IgG) (catalog no.: PM035), polyclonal rabbit antiSyntaxin-17 (human) antibody (catalog no.: PM076), and polyclonal rabbit anti-ATG16L1 antibody (catalog no.: PM040, RRID: AB_1278757) from MBL; a monoclonal mouse anti-p62 antibody (catalog no.: 610832, RRID: AB_398151) from BD control siRNA were calculated from three independent experiments including a 48 h were stained with AcidiFluor ORANGE, and the acidity of lysosomes was c and photographed at a bright field are shown.
Techniques: Derivative Assay, Liquid Chromatography with Mass Spectroscopy, Western Blot, Two Tailed Test, Binding Assay